Package: SoilR Title: Models of Soil Organic Matter Decomposition Version: 1.2.107 Date: 2023-10-13 Author: Carlos A. Sierra, Markus Mueller Maintainer: Carlos A. Sierra Description: Functions for modeling Soil Organic Matter decomposition in terrestrial ecosystems with linear and nonlinear systems of differential equations. The package implements models according to the compartmental system representation described in Sierra and others (2012) and Sierra and others (2014) . License: GPL-3 Depends: R (>= 3.5.0), deSolve,methods Imports: igraph,assertthat,parallel,expm,sets,purrr Suggests: FME,lattice,MASS,knitr,rmarkdown,getopt,tinytex LazyData: TRUE Collate: setGlobalVariables.R setOldClasses.R genericFunctions.R S4ClassDefinitions.R TimeMap.R ScalarTimeMap.R PoolId.R PoolIndex.R PoolName.R InFlux_by_PoolIndex.R InFlux_by_PoolName.R OutFlux_by_PoolIndex.R OutFlux_by_PoolName.R InternalFlux_by_PoolIndex.R InternalFlux_by_PoolName.R PoolConnection_by_PoolIndex.R PoolConnection_by_PoolName.R ConstantInFluxRate_by_PoolIndex.R ConstantInFluxRate_by_PoolName.R InFluxes.R ConstInFluxes.R ConstantInFlux_by_PoolIndex.R ConstantInternalFluxRate_by_PoolIndex.R ConstantInternalFluxRate_by_PoolName.R ConstantOutFluxRate_by_PoolIndex.R ConstantOutFluxRate_by_PoolName.R InFluxList_by_PoolIndex.R InFluxList_by_PoolName.R StateIndependentInFluxList_by_PoolIndex.R StateDependentInFluxVector.R OutFluxList_by_PoolIndex.R OutFluxList_by_PoolName.R InternalFluxList_by_PoolIndex.R InternalFluxList_by_PoolName.R ConstantInFluxList_by_PoolIndex.R ConstantInternalFluxRateList_by_PoolIndex.R ConstantInternalFluxRateList_by_PoolName.R ConstantOutFluxRateList_by_PoolIndex.R ConstantOutFluxRateList_by_PoolName.R Fc.R HelperFunctions.R BoundInFluxes.R deSolve.lsoda.wrapper.R RespirationCoefficients.R TransportDecompositionOperator.R SoilR.F0__deprecated_in_1.2.R MCSim.R DecompOp.R UnboundInflux.R UnBoundLinDecompOp.R BoundLinDecompOp.R UnBoundNonLinDecompOp.R DecompositionOperator_deprecated_in_1.2.R Model_by_PoolNames.R Model.R Model_14.R NlModel.R AutonomousLinearModel.R NonAutonomousLinearModel.R AWBmodel.R bacwaveModel.R bind.C14curves.R BoundFc.R CenturyModel.R ConstFc.R ConstLinDecompOp.R ConstLinDecompOpWithLinearScaleFactor.R SymbolicModel_by_PoolName.R UnBoundNonLinDecompOp_by_PoolNames.R cycling.R euler.R example.2DBoundInFluxesFromFunction.R example.2DBoundLinDecompOpFromFunction.R example.2DConstFC.Args.R example.2DConstInFluxesFromVector.R example.2DGeneralDecompOpArgs.R example.2DInFluxes.Args.R example.2DUnBoundLinDecompOp.R example.BoundLinDecompOpFromFunction.R example.ConstlinDecompOpFromMatrix.R example.nestedTime2DMatrixList.R example.nestedTime3DArrayList.R example.Time2DArrayList.R example.Time3DArrayList.R example.TimeMapFromArray.R FcAtm_deprecated_in_1.2.R fT.Arrhenius.R fT.Century1.R fT.Century2.R fT.Daycent1.R fT.Daycent2.R fT.Demeter.R fT.KB.R fT.LandT.R fT.linear.R fT.Q10.R fT.RothC.R fT.Standcarb.R function.R fW.Candy.R fW.Century.R fW.Daycent1.R fW.Daycent2.R fW.Demeter.R fW.Gompertz.R fW.Moyano.R fW.RothC.R fW.Skopp.R fW.Standcarb.R GeneralModel.R GaudinskiModel14.R GeneralModel_14.R GeneralNlModel.R ICBMModel.R linesCPool.R linMaker.R list.R listProduct.R makelink.R MeanAge.R MeanTT.R NpYdot.R OnepModel.R OnepModel14.R ParallelModel.R plotC14Pool.R plotCPool.R RothCModel.R SeriesLinearModel.R SeriesLinearModel14.R solver.R spectralNorm.R systemAge.R ThreepairMMmodel.R ThreepFeedbackModel.R ThreepFeedbackModel14.R ThreepParallelModel.R ThreepParallelModel14.R ThreepSeriesModel.R ThreepSeriesModel14.R transitTime.R tupelList.R turnoverFit.R makeListInstance.R pe.R pp.R plotPoolGraphFromTupleLists.R checkTargetClassOfElements.R TimeRangeIntersection.R TwopFeedbackModel.R TwopFeedbackModel14.R TwopMMmodel.R TwopParallelModel.R TwopParallelModel14.R TwopSeriesModel.R TwopSeriesModel14.R vecFuncMaker.R warnings.R Yasso07Model.R scalarFuncMaker.R apply_to_state_and_time.R YassoModel.R C14Atm_NH.R C14Atm.R Hua2013.R IntCal09.R IntCal13.R Graven2017.R IntCal20.R SHCal20.R incubation_experiment.R HarvardForest14CO2.R getTransferMatrix.R SoilR-package.R IVP_maker.R ydot_maker.R ICBM_N.R linearScalarModel.R CenturyModel14.R pathEntropy.R entropyRatePerJump.R entropyRatePerTime.R Hua2021.R RoxygenNote: 7.2.3.9000 Encoding: UTF-8 NeedsCompilation: no Packaged: 2026-10-09 08:01:29 UTC; root Config/pak/sysreqs: libglpk-dev libxml2-dev Repository: https://crlsierra.r-universe.dev Date/Publication: 2023-10-13 14:31:33 UTC RemoteUrl: https://github.com/cran/SoilR RemoteRef: HEAD RemoteSha: 6d63c04336e3ce208a804462828bab40cebf5c99